Index

_

__call__() (patch_denoise.bindings.cli.ToDict method) _get_patch_param() (patch_denoise.space_time.base.BaseSpaceTimeDenoiser method) _make_results_file() (patch_denoise.bindings.nipype.PatchDenoise method) _patch_processing() (patch_denoise.space_time.base.BaseSpaceTimeDenoiser method) (patch_denoise.space_time.lowrank.AdaptiveDenoiser method) (patch_denoise.space_time.lowrank.HybridPCADenoiser method) (patch_denoise.space_time.lowrank.MPPCADenoiser method) (patch_denoise.space_time.lowrank.OptimalSVDDenoiser method) (patch_denoise.space_time.lowrank.RawSVDDenoiser method)

_run_interface() (patch_denoise.bindings.nipype.NoiseStdMap method) (patch_denoise.bindings.nipype.PatchDenoise method)

A

adaptive_thresholding() (in module patch_denoise.denoise) AdaptiveDenoiser (class in patch_denoise.space_time.lowrank) add2patch() (patch_denoise.space_time.base.PatchedArray method)

add_frames() (in module patch_denoise.simulation.activations) add_temporal_gaussian_noise() (in module patch_denoise.simulation.noise) add_temporal_rician_noise() (in module patch_denoise.simulation.noise)

B

BaseSpaceTimeDenoiser (class in patch_denoise.space_time.base)

C

compute_mask() (in module patch_denoise.bindings.utils)

D

denoise() (patch_denoise.space_time.base.BaseSpaceTimeDenoiser method) (patch_denoise.space_time.lowrank.AdaptiveDenoiser method) (patch_denoise.space_time.lowrank.HybridPCADenoiser method) (patch_denoise.space_time.lowrank.NordicDenoiser method) (patch_denoise.space_time.lowrank.OptimalSVDDenoiser method) (patch_denoise.space_time.lowrank.RawSVDDenoiser method)

DenoiseParameters (class in patch_denoise.bindings.utils)

E

eig_analysis() (in module patch_denoise.space_time.utils)

eig_synthesis() (in module patch_denoise.space_time.utils) estimate_noise() (in module patch_denoise.space_time.utils)

F

from_str() (patch_denoise.bindings.utils.DenoiseParameters class method)

G

g_factor_map() (in module patch_denoise.simulation.phantom) get_patch() (patch_denoise.space_time.base.PatchedArray method)

get_patch_locs() (in module patch_denoise.space_time.utils) get_str() (patch_denoise.bindings.utils.DenoiseParameters class method)

H

hybrid_pca() (in module patch_denoise.denoise)

HybridPCADenoiser (class in patch_denoise.space_time.lowrank)

I

input_spec (patch_denoise.bindings.nipype.NoiseStdMap attribute) (patch_denoise.bindings.nipype.PatchDenoise attribute)

L

LLRDenoiserOperator (class in patch_denoise.bindings.modopt)

load_as_array() (in module patch_denoise.bindings.utils) load_complex_nifti() (in module patch_denoise.bindings.utils)

M

main() (in module patch_denoise.bindings.cli) marchenko_pastur_median() (in module patch_denoise.space_time.utils) module patch_denoise patch_denoise.bindings patch_denoise.bindings.cli patch_denoise.bindings.modopt patch_denoise.bindings.nipype patch_denoise.bindings.utils patch_denoise.denoise patch_denoise.simulation patch_denoise.simulation.activations patch_denoise.simulation.noise patch_denoise.simulation.phantom patch_denoise.space_time patch_denoise.space_time.base patch_denoise.space_time.lowrank patch_denoise.space_time.utils

mp_pca() (in module patch_denoise.denoise) MPPCADenoiser (class in patch_denoise.space_time.lowrank) mr_ellipsoid_parameters() (in module patch_denoise.simulation.phantom) mr_shepp_logan() (in module patch_denoise.simulation.phantom) mr_shepp_logan_t2_star() (in module patch_denoise.simulation.phantom)

N

n_patches (patch_denoise.space_time.base.PatchedArray property) NoiseStdMap (class in patch_denoise.bindings.nipype) NoiseStdMapInputSpec (class in patch_denoise.bindings.nipype)

NoiseStdMapOutputSpec (class in patch_denoise.bindings.nipype) nordic() (in module patch_denoise.denoise) NordicDenoiser (class in patch_denoise.space_time.lowrank)

O

optimal_thresholding() (in module patch_denoise.denoise) OptimalSVDDenoiser (class in patch_denoise.space_time.lowrank)

output_spec (patch_denoise.bindings.nipype.NoiseStdMap attribute) (patch_denoise.bindings.nipype.PatchDenoise attribute)

P

parse_args() (in module patch_denoise.bindings.cli) patch_denoise module patch_denoise.bindings module patch_denoise.bindings.cli module patch_denoise.bindings.modopt module patch_denoise.bindings.nipype module patch_denoise.bindings.utils module patch_denoise.denoise module patch_denoise.simulation module patch_denoise.simulation.activations module

patch_denoise.simulation.noise module patch_denoise.simulation.phantom module patch_denoise.space_time module patch_denoise.space_time.base module patch_denoise.space_time.lowrank module patch_denoise.space_time.utils module PatchDenoise (class in patch_denoise.bindings.nipype) PatchDenoiseInputSpec (class in patch_denoise.bindings.nipype) PatchDenoiseOutputSpec (class in patch_denoise.bindings.nipype) PatchedArray (class in patch_denoise.space_time.base) pretty_name (patch_denoise.bindings.utils.DenoiseParameters property) pretty_par (patch_denoise.bindings.utils.DenoiseParameters property)

R

raw_svt() (in module patch_denoise.denoise)

RawSVDDenoiser (class in patch_denoise.space_time.lowrank)

S

save_array() (in module patch_denoise.bindings.utils) set_patch() (patch_denoise.space_time.base.PatchedArray method)

sure_atn_cost() (in module patch_denoise.space_time.lowrank) svd_analysis() (in module patch_denoise.space_time.utils) svd_synthesis() (in module patch_denoise.space_time.utils)

T

ToDict (class in patch_denoise.bindings.cli)