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patch-denoise documentation

  • API Reference
  • LLR Denoising Methods
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  • API Reference
  • LLR Denoising Methods
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  • patch_denoise
    • patch_denoise.bindings
      • patch_denoise.bindings.cli
        • patch_denoise.bindings.cli.bids_extra_path
        • patch_denoise.bindings.cli.main
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      • patch_denoise.bindings.nipype
        • NoiseStdMap
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        • NoiseStdMapOutputSpec
        • PatchDenoise
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      • patch_denoise.bindings.utils
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        • patch_denoise.bindings.utils.load_complex_nifti
        • patch_denoise.bindings.utils.save_array
    • patch_denoise.denoise
      • patch_denoise.denoise.adaptive_thresholding
      • patch_denoise.denoise.hybrid_pca
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    • patch_denoise.gpu
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      • patch_denoise.gpu.dataloader
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        • patch_denoise.gpu.dataloader.sliding_sum_nd
        • PatchDataset
      • patch_denoise.gpu.denoiser
        • MPPCADenoiser
        • OptimalSVDDenoiser
      • patch_denoise.gpu.main
        • patch_denoise.gpu.main.main_gpu
        • patch_denoise.gpu.main.make_denoiser
    • patch_denoise.simulation
      • patch_denoise.simulation.activations
        • patch_denoise.simulation.activations.add_frames
      • patch_denoise.simulation.noise
        • patch_denoise.simulation.noise.add_temporal_gaussian_noise
        • patch_denoise.simulation.noise.add_temporal_rician_noise
      • patch_denoise.simulation.phantom
        • patch_denoise.simulation.phantom.g_factor_map
        • patch_denoise.simulation.phantom.mr_ellipsoid_parameters
        • patch_denoise.simulation.phantom.mr_shepp_logan
        • patch_denoise.simulation.phantom.mr_shepp_logan_t2_star
    • patch_denoise.space_time
      • patch_denoise.space_time.base
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        • BaseSpaceTimeDenoiser
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      • patch_denoise.space_time.lowrank
        • patch_denoise.space_time.lowrank.sure_atn_cost
        • AdaptiveDenoiser
        • HybridPCADenoiser
        • MPPCADenoiser
        • NordicDenoiser
        • OptimalSVDDenoiser
        • RawSVDDenoiser
      • patch_denoise.space_time.utils
        • patch_denoise.space_time.utils.eig_analysis
        • patch_denoise.space_time.utils.eig_synthesis
        • patch_denoise.space_time.utils.estimate_noise
        • patch_denoise.space_time.utils.get_patch_locs
        • patch_denoise.space_time.utils.marchenko_pastur_median
        • patch_denoise.space_time.utils.svd_analysis
        • patch_denoise.space_time.utils.svd_synthesis
  • API Reference
  • patch_denoise
  • patch_denoise.simulation
  • patch_denoise.simulation.phantom

patch_denoise.simulation.phantom#

Shepp-Logan phantom for use with MR simulations.

From mckib2/phantominator

Functions

g_factor_map

Return a g-factor map using a window function.

mr_ellipsoid_parameters

Return parameters of ellipsoids.

mr_shepp_logan

Shepp-Logan phantom with MR tissue parameters.

mr_shepp_logan_t2_star

Return a 3D T2*-weighted Shepp-Logan phantom.

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