axis3dcut

snake.toolkit.plotting.axis3dcut(fig, ax, background, z_score, gt_roi=None, width_inches=7, cbar=True, cuts=None, bbox=None, slices=None, bg_cmap='gray')

Display a 3D image with zscore and ground truth ROI.

Parameters:

• fig (Figure)

• ax (Axes)

• background (ndarray[Any, dtype[_ScalarType_co]])

• z_score (ndarray[Any, dtype[_ScalarType_co]])

• gt_roi (ndarray[Any, dtype[_ScalarType_co]] | None)

• width_inches (float)

• cbar (bool)

• cuts (tuple[int, ...] | None)

• bbox (tuple[tuple[Any, Any], ...] | None)

• slices (tuple[tuple[Any, Any, Any], ...] | None)

• bg_cmap (str)

Return type:

tuple[Figure, Axes, tuple[int, …]]

Examples using snake.toolkit.plotting.axis3dcut

Generate a Phantom and visualize the contrast at different TE values

Generate a Phantom and visualize the contrast at different TE values

Single anatomical EPI with SNAKE-fMRI

Single anatomical EPI with SNAKE-fMRI

Compare Fourier Model and T2* Model for EPI

Compare Fourier Model and T2* Model for EPI

Compare Fourier Model and T2* Model for Stack of Spirals trajectory

Compare Fourier Model and T2* Model for Stack of Spirals trajectory